Table 4 Genotypes for polymorphisms in the trnS-trnG region (8300–9967 bp). Discrepancies between the genotypes obtained by MPS and CE are indicated in parentheses
From: Massively parallel sequencing of Cannabis sativa chloroplast hotspots for forensic typing
Sample name | psbI-trnS hSTR (T) | hSTRa (A) | trnS-trnG SNP1 (T/C) | trnS-trnG SNP2 (A/T) | hSTRa (T) | INDELa (CAATAT) | SNPa (A/T) | trnS-trnG hSTR1 (Variable) | trnS-trnG hSTR2 (T) | hSTRa (A) | trnS-trnG SNP3 (T/A) | SNPa (A/C) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Start location (bp) | 8359 | 8585 | 8595 | 8684 | 8685 | 8731 | 8877 | 9018 | 9104 | 9149 | 9360 | 9463 |
Yoruba Nigeria (NC_027223.1) | 7 | 10 | T | A | 9 | Absent | A | 15 | 11 | 12 | A | A |
H2-4 | 7 | 10 | T | A | 9 | Absent | A | 15 | 11 | 12 | A | A |
H3-3 | 7 | 10 | T | A | 9 | Absent | A | 15 | 11 | 12 | A | A |
H5-4 | 8 | 10 | C | T | 9 | Absent | A | 15 | 11 | 12 | T | A |
NT H5-1 | 7 | 10 | T | A | 9 | Absent | A | 15 | 11 | 12 | T | A |
NT H5-2 | 8 | 10 | C | T | 9 | Absent | A | 15 | 11 | 12 | T | A |
NT H5-4 | 8 | 12 | T | A | 8 | Absent | A | 16 | 12 (CE: 11) | 11 | T | C |
H8-1 | 8 | 10 | C | T | 9 | Absent | A | 15 | 11 | 12 | T | A |
10-A1 | 8 | 10 | C | T | 9 | Absent | A | 15 | 11 | 12 | T | A |
12-A7 | 8 | 10 | C | T | 9 | Absent | A | 15 | 11 | 12 | T | A |
16-B1 | 8 | 10 | T | A | 8 | Absent | T | 16 | 12 (CE: 11) | 11 | T | C |
21-A16 | 8 | 10 | C | T | 9 | Absent | A | 15 | 11 | 12 | T | A |
35 | 8 | 10 | T | A | 8 | Present | A | 16 | 12 (CE: 11) | 11 | T | C |
41 | 8 | 10 | T | A | 8 | Absent | T | 16 | 12 (CE: 11) | 11 | T | C |
MedMJ10 | 8 | 10 | C | T | 9 | Absent | A | 15 | 11 | 12 | T | A |