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Table 2 Genotypes for polymorphisms in the trnK-matK-trnK region (2233–4337 bp)

From: Massively parallel sequencing of Cannabis sativa chloroplast hotspots for forensic typing

Sample name

trnK-matK-trnK INDEL (GAATAC)

trnK-matK-trnK SNP (C/T)

SNPa (T/C)

SNPa (A/C)

trnK-matK-trnK STR1 (A)

trnK-matK-trnK STR2 (T)

Start location (bp)

2984

3258

3561

3752

3809

4109

Yoruba Nigeria (NC_027223.1)

Absent

C

T

A

11

10

H2-4

Absent

C

T

A

11

10

H3-3

Absent

C

T

A

11

10

H5-4

Present

C

T

A

11

10

NT H5-1

Absent

C

T

A

11

10

NT H5-2

Present

C

T

A

11

10

NT H5-4

Present

C

C

C

15

9

H8-1

Present

C

T

A

11

10

10-A1

Present

C

T

A

11

10

12-A7

Present

C

T

A

11

10

16-B1

Present

C

C

C

13

9

21-A16

Present

C

T

A

11

10

35

Present

C

C

C

15

9

41

Present

C

C

C

14

9

MedMJ10

Present

C

T

A

11

10

  1. Italics indicate polymorphisms not analyzed previously by CE
  2. a Indicates new polymorphisms discovered in this study